//dcpYXcntct -  Obtain a double array of tYX (1000-10000 us) for YX
//              CP using the sequence ahYX. 

//              Processing determines the tYX with the greatest 
//              intensity and reports it to the probe file.           

//              Argument 1 is the action: 'setup', 'process' or 'plot'. The 
//              action 'setup' initiates an experiment.  The actions 'process'
//              and 'plot' are called by chempackQ. 

//              Argument 2 is the nucleus, 'C13' (only). The second nucleus is 
//              assumed to be 'N15'.

//             Argument 3 is the region:
//                       'alpha'(13C alpha),DCP code $reg2 = 'NCa', $reg = 'HCa'
//                       'carbonyl(13C carbonyl), DCP code $reg2 = 'NCO', $reg='HCO' 
//                        At present: the 15N region if fixed as 'amide, $reg1 = 'HNai'

//                  Also: For calibration with the 13C offset at 100 ppm set:
//                       'salpha'(13C alpha),DCP code $reg2 = 'sNCa', $reg = 'sHCa'
//                       'scarbonyl(13C carbonyl), DCP code $reg2 = 'sNCO', $reg='sHCO'

//              Arguments 4 and 5 are not used. 

//==================
// The SETUP macro
//==================

if (($#>0) and ($1='setup')) then   

// Set the Nuclei and Region

   rtppar('Settancpx')
   AhYX

// Set the Observe Region for Pulsewidths, Acquisition and Decoupling.

   $reg='' $pwr='' $nuc=''
   $macroname = $0 + '(\'region\',$2,$3,$4,1):$reg,$pwr,$nuc'
   exec($macroname) 
   $pwr='' 

// Set the Decoupler-2 Region-code for HY CP and dec2.

   $macroname = $0 + '(\'region\',\'N15\',\'amide\',\'\',0):$reg1,$pwr1,$nuc1'
   exec($macroname) 
   $pwr1=''

// Set the Double-CP Region-code for YX CP

   $reg2=''
   if ($reg='HCa') then 
      $reg2='NCa'
   elseif ($reg = 'sHCa') then 
      $reg2='sNCa'
   elseif ($reg = 'HCO') then 
      $reg2='NCO'
   else 
      $reg2='sNCO'
   endif 

 // Get the Spinrate

   exists('SPspinrateon','parameter','global'):$e
   if ($e<0.5) then 
      create('SPspinrateon','string','global')
      SPspinrateon='n'
   endif
   if (SPspinrateon='y') then 
      $macronamespin = $0 + '(\'spinrate\'):$srate'
      exec($macronamespin)
   else 
      probeparamgroup('getlocal',$reg,'H1','','srateHX'):srate
   endif  

// Calibrate setddrtc for CP

   exists('ddrpm','parameter'):$e
   if ($e < 0.5) then
      create('ddrpm','string')
      ddrpm='r'
   endif   
   rof2=rd-0.6 alfa=ad

// Check the HY Spinrate

   probeparamgroup('getlocal',$reg1,'H1','','srateHX'):$srate
   if (((srate < 0.995*$srate) or (srate > 1.005*$srate)) and (SPspinrateon='y')) then       
      write('error','Warning: Warning: srate=%f Hz and amide srateHX=%f Hz in the Probe File Disagree\n',srate,$srate)
   endif

// Check the YX Spinrate

   probeparamgroup('getlocal',$reg2,'N15','','srateYX'):$srate
   if (((srate < 0.995*$srate) or (srate > 1.005*$srate)) and (SPspinrateon='y')) then       
      write('error','Warning: Warning: $srate=%f Hz and srateYX=%f in Probe File Hz Disagree\n',srate,$srate)
   endif

// Obtain Pulsewidth Parameters from the Observe Region, $reg.

   probeparamgroup('getlocal',$reg,$nuc,'','ofX90','dbX90'):tof,tpwr
   probeparamgroup('get',$reg,$nuc,'90X','a','pw')
   probeparamgroup('getlocal',$reg,'H1','','ofX90','dbX90'):dof,dpwr
   probeparamgroup('get','hp'+$reg,'H1','90H','a','pw')

// Obtain the Decoupler 2 Pulse-Width parameters from $reg1.

   probeparamgroup('getlocal',$reg1,$nuc1,'','ofX90','dbX90'):dof2,dpwr2
   probeparamgroup('getlocal',$reg1,$nuc1,'90X','a','pw'):aY90,pwY90

// Obtain the HY CP Parameters from the Decoupler 2 Region, $reg1.

   probeparamgroup('getlocal',$reg1,'H1','HX','ch','sh','to','fr',
                                    'aH','b','d','t','of'):chHY,shHY,toHY,frHY,
                                    aHhy,bHY,dHY,tHY,ofHY
   probeparamgroup('getlocal',$reg1,$nuc1,'HX','aX'):aYhy

// Obtain Proton Decoupling Parameters from the Observe Region, $reg.
 
   probeparamgroup('get',$reg,'H1','tppmH','a','pw','ph')
   probeparamgroup('get',$reg,'H1','spinalH','a','pw','ph','alp')
   Hseq = 'spinal'

// Obtain DCP Parameters from the DCP region, $reg2.

   probeparamgroup('get',$reg2,$nuc1,'YX','ch','sh','to','fr',
                                    'aY','b','d','t','of')
   probeparamgroup('get',$reg2,$nuc,'YX','aX')
   probeparamgroup('get',$reg2,'H1','','aHyx')

// Set of the Array of tHX

   array('tYX',10,1000,1000)
   nt=4
 
// Set the Auto Display to Absolute Value

   $macroname = $0 + '(\'maxamp\',100)'
   wnt='vp=0 sb=\'y\' wft setref av ' + $macroname + ' noislm(1.0) dssh'

// Set Macro-Specific Processing and Plotting 

   wexp = 'chempackQ'
   execprocess = $0 + '(\'process\',\''+$2+'\',\''+$3+'\',\''+$4+'\',0)'
   execplot = ''
   clear(2)
//   au
   return
endif

//===========================
// Macro-Specific Processing
//===========================

if (($# > 0) and ($1 = 'process')) then 

// Analyze the 1H Nutation Curve

   $macroname = $0 + '(\'cntctyx\',$2,$3,$4,0)'
   exec($macroname)  
endif

//===========================
// Macro-Specific Plotting
//===========================

if (($# > 0) and ($1 = 'plot')) then 
   wc = 50 sc = 50
   plot1d
   return  
endif 

//==================================
// Begin AutoCalibration Utilities
//==================================

//--------------------
// The maxamp function
//--------------------

if (($# > 0) and ($1 = 'maxamp')) then
   select(celem) 
   if (celem=1) then 
      vsadj($2) 
   endif
   peak:$ht
   if ($ht>$2) then 
      vsadj($2) 
   endif 
   return    
endif  

//--------------------------
// The  minmaxfit function
//--------------------------

if (($# > 0) and ($1 = 'minmaxfit')) then 

   $bestone=$2
   $lim=2
   if ($#>3) then $lim=$4 endif

// Prepare 'analyze.inp'

   $file=curexp+'/analyze.inp'
   exists($file,'file'):$a
   if ($a>0.5) then 
      write('reset',$file) 
   endif

   format((2*$lim+1),2,0):$sizes

   write('file',$file,'AMPLITUDE')
   write('file',$file,'INTENSITY')
   write('file',$file,'%12s%13s%7s%7s\n','1',$sizes,'linear','linear')
   format((2*$lim+1),2,0):$sizes
   write('file',$file,'%8s%5s','NEXT',$sizes)
   write('file',$file,'1')

   $step=$bestone-$lim
   repeat
      select($step)
      peak:$ht
      write('file',$file,'%14.1f%12.2f',$step,$ht)
      $step=$step+1
   until ($step>$bestone+$lim)

// 'poly2 Analysis with 'expfit'

   analyze('expfit','regression','poly2')
   $file=curexp+'/analyze.out'
   lookup('file',$file)
   lookup('seek','NEXT','skip', '2','read','4'):$a0s,$a1s,$a2s
   format($a0s,8,4):$a0
   format($a1s,8,4):$a1
   format($a2s,8,4):$a2
   $inf=-$a1/(2.0*$a2)
   $infval=$a0+$a1*$inf+$a2*$inf*$inf

// Mean Value from 'poly0' 

   analyze('expfit','regression','poly0')
   lookup('file',$file)
   lookup('seek','NEXT','skip', '2','read','4'):$a0s,$a1s,$a2s
   format($a0s,8,4):$a0
   $mean=$a0
//   write('line3','$inf=%f $infval=%f $mean=%f',$inf,$infval,$mean)
//   write('line3','$2 = %f',$2)

// Min ($minmax<0) or Max ($minmax>0) or none ($minmax=0)

   $minmax=0 $ret=0.0
   if (($bestone-$lim)<$inf)and($inf<($bestone+$lim)) then 
      $ret=$inf
      if ($infval<$mean) then 
         $minmax=-1
      else
         $minmax=1
      endif
   endif

//   write('line3','$xmin = %f $ret = %f $xmax = %f $minmax=%f',$bestone-$lim,$ret,$bestone+$lim,$minmax)

// Return the new $bestone and a Fraction After $bestone,
// else Return $bestone=$2 and $remainder=0.0 

   $remainder=0 
   if (($3='min')and($minmax<0)) then 
      $bestone=trunc($ret) 
      $remainder=$ret-$bestone
   endif
   if (($3='max')and($minmax>0)) then 
      $bestone=trunc($ret) 
      $remainder=$ret-$bestone
   endif
   if ($minmax=0) then
      $bestone=$2 
      $remainder=0.0
   endif
//   write('line3','$bestone=%f',$bestone)
   return($bestone,$remainder)
endif 

//---------------------
// The Contact YX Macro
//---------------------

if (($# > 0) and ($1 = 'cntctyx')) then

// Set the Aquisition Region

   $reg='' $pwr='' $nuc=''
   $macroname = $0 + '(\'region\',$2,$3,$4,0):$reg,$pwr,$nuc'
   exec($macroname)
   $pwr=''

//Set the Max Amplitude Macro

   $macronamemaxamp = $0 + '(\'maxamp\',100)'

// Set the Region (1)for the Initial CP

   $macroname = $0 + '(\'region\',\'N15\',\'amide\',\'\',0):$reg1,$pwr1,$nuc1'
   exec($macroname) 
   $pwr1=''

// Set the Region Code (2) for XY CP

   $reg2=''
   if ($reg='HCa') then 
      $reg2='NCa'
   elseif ($reg = 'sHCa') then 
      $reg2='sNCa'
   elseif ($reg = 'HCO') then 
      $reg2='NCO'
   else 
      $reg2='sNCO'
   endif 

// Analyze the Contact-Time Array
    
   $bestone=1 $counter=1 $best=0
   fn=16*np vp=0 av wft
   select(1) exec($macronamemaxamp) noislm(1.0) //SS_AutoCal_maxamp(100) noislm(1.0)
   repeat
      select($counter)
      peak:$ht
      if ($ht>$best) then $best=$ht $bestone=$counter endif
      $counter=$counter+1
   until ($counter>arraydim)

// Select the Best value of the Contact-time 

   $tYX=tYX[$bestone]

// Update the Contact-time 

   probeparamgroup('setlocal',$reg2,$nuc1,'','tYX',$tYX)

endif

//-------------------
// The Region Macro
//-------------------

if (($# > 0) and ($1 = 'region')) then
   $nuc=$2
   $reg=''
   $pwr=$4
   if (($# > 4) and ($5 = 1)) then 
      if ($2='C13') then 
         tn='C13' dn='H1' dn2='N15' dn3=''   
         wc = 200 sc =10
         ad=4.0 rd=4.0 ddrtc=8.0 rp=0 lp=0 d1=2.0 nt=1 ss=2 bs=4
         sw=100000.0 at=0.01 fn=16.0*np sb=at/2.0 sb='y' sbs='n' lb=50 gain=30
         ofHX=0.0
         if ($3='alpha') then
            d1=2.0 nt=1
            setref setoffset('C13',63):$tof tof=0.1*trunc($tof/0.1 + 0.5) sp=38p wp=50p
            $reg='HCa'
         elseif ($3='salpha') then
            d1=2.0 nt=1
            setref setoffset('C13',175):$tof tof=0.1*trunc($tof/0.1 + 0.5) sp=38p wp=50p
            $reg='sHCa'
         elseif ($3='carbonyl') then 
            d1=2.0 nt=1
            setref setoffset('C13',175):$tof tof=0.1*trunc($tof/0.1 + 0.5) sp=165p wp=20p
            $reg='HCO'
         elseif ($3='scarbonyl') then 
            d1=2.0 nt=1
            setref setoffset('C13',63):$tof tof=0.1*trunc($tof/0.1 + 0.5) sp=165p wp=20p
            $reg='sHCO'
         elseif ($3='adam') then 
            d1=2.0 nt=1.0
            setref setoffset('C13',33.3):$tof tof=0.1*trunc($tof/0.1 + 0.5) sp=28p wp=20p
            $reg='HC'
         endif
      elseif ($2='N15') then 
         tn='N15' dn='H1' dn2='C13'  dn3=''   
         wc = 200 sc =10
         ad=16.0 rd=4.0 ddrtc=20.0 rp=0 lp=0 ss=2 bs=4
         sw=100000.0 at=0.01 fn=16.0*np sb=at/2.0 sb='y' sbs='n' lb=0  lb='n' gain=30  
         ofHX=0.0
         if ($3='amide') then
            d1=2.0 nt=1
            setref setoffset('N15',115):$tof tof=0.1*trunc($tof/0.1 + 0.5) sp=90p wp=50p
            $reg='HNai'
         elseif ($3='amine') then
            d1=2.0 nt=1 
            setref setoffset('N15',35):$tof tof=0.1*trunc($tof/0.1 + 0.5) sp=15p wp=40p
            $reg='HNam'
         elseif ($3='amino') then 
            d1=2.0 nt=1
            setref setoffset('N15',35):$tof tof=0.1*trunc($tof/0.1 + 0.5) sp=15p wp=40p
            $reg='HN'
         endif         
      endif
      probeparamgroup('setlocal',$reg,$nuc,'','ofX90',tof)
   else
      if ($2='C13') then 
         if ($3='alpha') then
            $reg='HCa'
         elseif ($3='salpha') then
            $reg='sHCa'
         elseif ($3='carbonyl') then 
            $reg='HCO'
         elseif ($3='scarbonyl') then 
            $reg='sHCO'
         elseif ($3='adam') then 
            $reg='HC'
         endif
      elseif ($2='N15') then 
         if ($3='amide') then
            $reg='HNai'
         elseif ($3='amine') then 
            $reg='HNam'
         elseif ($3='amino') then 
            $reg='HN'
         endif
      endif
   endif
   return($reg,$pwr,$nuc)
endif

//---------------------
// The Spin Rate Macro
//---------------------

if (($# > 0) and ($1 = 'spinrate')) then

// Get the Current Spin Rate with an Average of 10

   banner('Measuring Spinning Rate and Stability')
   $count=1 srate=0
   repeat
      $index=''
      if ($count<10) then
         format($count,1,0):$index
      else
         format($count,2,0):$index
      endif
      $dest=curexp+'/stat'+$index
      shell('showstat > ',$dest):$dummy
 
      lookup('file',$dest,'currently', 'at:','read'):$masrate,$ret 
      if $ret then
         format($masrate,5,0):srate[$count]
      endif
//    echo($masrate)
      shell('sleep 1')
      $count=$count+1
   until ($count>10)

   averag(srate[1],srate[2],srate[3],srate[4],srate[5],srate[6],
       srate[7],srate[8],srate[9],srate[10]):$avgsrate,$dev

   $avgsrate = trunc($avgsrate + 0.5)  

//Check the Spin Rate 

   if ($avgsrate<500) then 
      $message='MAS Spin Rate Measurement is Less Than 500 Hz - Aborting with 0.0 '
      banner($message)
      srate = 0.0
//      abort
   else
      srate = $avgsrate
   endif 

// Remove Files Generated by the Spin Rate Measurement

   $count=1
   repeat
      $index=''
      if ($count<10) then
         format($count,1,0):$index
      else
         format($count,2,0):$index
      endif
      $dest=curexp+'/stat'+$index
      rm($dest):$dummy
      $count=$count+1
   until ($count>10)
   return(srate)
endif 
